Certificates of Origin for Food Imports: Complete Guide for Importers

For Oversea Exporters to Japan

Certificates of Origin (COO) are essential in international food trade. They verify the country where the goods were produced and are often required for customs clearance, quarantine compliance, and preferential tariff claims under free trade agreements (FTAs).

Mistakes or omissions can lead to customs delays, denied imports, or loss of preferential tariffs, which can be costly for importers. This guide explains COO requirements for food, step-by-step preparation, common pitfalls, and best practices, with a practical food-specific checklist for easy reference.


What is a Certificate of Origin (COO)?

A Certificate of Origin is an official document used in international trade to certify the country of origin of goods.

Key Points for Food Imports:

  • Confirms the country of production or processing
  • Required for customs clearance in most countries
  • Necessary to claim preferential tariff rates under FTAs such as Japan-EU EPA, CPTPP, ASEAN FTA
  • Often submitted alongside HS codes, health certificates, and quarantine documents
  • Can be issued by chambers of commerce, government authorities, or self-declared by exporters depending on the country

Types of COO:

  • Non-preferential COO: Confirms origin for customs but does not affect tariffs
  • Preferential COO: Required for FTAs to claim reduced import duties; must meet rules of origin

When a COO is Required for Food Imports

  1. Customs Clearance
    • Many countries require COO to verify the declared origin of food products.
  2. Preferential Tariff Claims
    • COO is necessary to apply reduced duty rates under FTAs.
  3. Quarantine and Regulatory Compliance
    • Authorities use COO to assess eligibility for plant or animal quarantine, check prohibited species, or enforce regional restrictions.

Examples

  • Fresh fruits from Chile: COO needed to claim preferential rates under the Japan-Chile Economic Partnership Agreement
  • Unpasteurized cheese from France: COO confirms country of production for animal-derived product inspections
  • Herbal teas: COO shows origin of raw herbs for plant quarantine compliance

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How to Prepare a Certificate of Origin for Food

Step 1: Confirm Requirements

  • Determine if COO is required for the food and country of import
  • Check if a preferential COO is needed for FTAs
  • Verify acceptable issuing authorities (chamber of commerce, government, or exporter self-declaration)

Step 2: Gather Required Information

  • Exporter and importer details
  • Product description and HS code
  • Quantity, weight, packaging
  • Country of origin of raw materials (especially for processed foods)

Step 3: Complete and Verify the COO

  • Ensure information matches invoices, packing lists, and customs documents
  • Include signature, stamp, or digital verification
  • For preferential COO, confirm rules of origin are satisfied

Step 4: Submission

  • Submit COO along with other required documents (health or quarantine certificates) at customs
  • Retain digital and physical copies for audits or verification

For more information, see this article.
β†’ Common Quarantine Issues in Food Imports and How to Handle Them | Food-Specific Checklist Included
β†’ How to Find HS Codes for Beginners: 3 Common Mistakes to Avoid


Common COO Issues and How to Avoid Them

IssueCauseExampleHow to Avoid
COO not acceptedMissing signature/stamp or incomplete infoFresh fruit shipment delayed at Japanese portVerify issuing authority; complete all fields
Mismatch with invoice or HS codeDiscrepancy between COO and other documentsUnpasteurized cheese rejected for preferential tariffEnsure all quantities, weights, and descriptions match
Incorrect preferential COORules of origin not metProcessed snacks fail under ASEAN FTAConfirm origin of all ingredients; check FTA rules before export
Self-declared COO rejectedImport country does not accept self-declared COOFrozen vegetables COO not accepted by EU customsUse chamber-of-commerce-issued COO when required

Food-Specific COO Checklist

Food TypeCOO Type RequiredOther DocumentsNotes
Fresh fruits & vegetablesPreferential / Non-preferentialPlant quarantine certificateVerify FTA rules; confirm no prohibited species
Dairy (cheese, yogurt)Preferential / Non-preferentialAnimal quarantine certificate, import notificationInclude unpasteurized verification
Processed meatPreferential / Non-preferentialAnimal quarantine certificate, food sanitation notificationConfirm multi-origin ingredient compliance
Confectionery & seasoningsPreferential / Non-preferentialFood sanitation certificateCheck ingredient origin for preferential tariffs
Frozen & packaged foodsPreferential / Non-preferentialFood sanitation certificate, HS code verificationEnsure COO matches raw material origins
All categoriesNon-preferential COO may be requiredCustoms declaration documentsAlways verify latest regulations and country-specific requirements

COO Workflow (Text-Based Flowchart)

  1. Exporter prepares COO request β†’
  2. Chamber of Commerce or authority verifies origin β†’
  3. COO issued (signed/stamped/digitally verified) β†’
  4. Exporter submits COO to importer β†’
  5. Importer submits COO with customs & quarantine documents β†’
  6. Customs clears shipment and applies tariffs

Tip: For multi-ingredient processed foods, trace ingredient origins carefully to meet rules of origin for preferential COO.


Best Practices for Food Importers

  1. Plan in advance: Include COO preparation in import schedules to avoid delays.
  2. Coordinate with exporters: Ensure understanding of document requirements, especially for FTAs.
  3. Cross-check documents: COO must match invoices, packing lists, quarantine, and health certificates.
  4. Stay updated: Rules of origin and COO requirements change regularly; verify with customs and FTA authorities.
  5. Leverage digital systems: Where accepted, submit digital COO to speed clearance and record-keeping.

International Considerations

  • Japan: MAFF, MHLW, Customs (see references below)
  • EU: COO required for preferential tariffs under EU trade agreements
  • US: COO often required for FTA claims (e.g., USMCA)
  • China: COO needed for customs clearance, often verified by chambers of commerce in the exporting country

While the focus is on Japan, these principles generally apply globally, with local regulations checked for each import country.

Summary

  • Certificates of Origin are essential for customs clearance, quarantine compliance, and preferential tariff claims.
  • Key Steps for Importers:
    1. Determine if COO is required (preferential or non-preferential)
    2. Prepare accurate and verifiable COO documentation
    3. Match COO with invoices, HS codes, and quarantine documents
    4. Verify rules of origin for preferential tariffs
    5. Include schedule buffers for COO verification and customs processing
  • Use the food-specific checklist and workflow to minimize errors, prevent delays, and ensure smooth food import operations.

References

  1. Japan Customs – Certificates of Origin
    https://www.customs.go.jp/english/c-answer_e/coa_e.htm
  2. Japan Chamber of Commerce & Industry – Export Certificates
    https://www.jcci.or.jp/english/
  3. Japan Ministry of Agriculture, Forestry and Fisheries (MAFF) – Import Requirements
    https://www.maff.go.jp/aqs/english/
  4. World Trade Organization (WTO) – Rules of Origin
    https://www.wto.org/english/tratop_e/rulesorigin_e/rules_origin_e.htm
  5. European Commission – Certificates of Origin for Preferential Tariffs
    https://trade.ec.europa.eu/doclib/docs/2011/july/tradoc_148003.pdf